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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bav: Bordetella avium

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bav00010 Glycolysis / Gluconeogenesis SBML MML
bav00020 Citrate cycle (TCA cycle) SBML MML
bav00030 Pentose phosphate pathway SBML MML
bav00031 (Undocumented) SBML MML
bav00040 Pentose and glucuronate interconversions SBML MML
bav00051 Fructose and mannose metabolism SBML MML
bav00052 Galactose metabolism SBML MML
bav00053 Ascorbate and aldarate metabolism SBML MML
bav00061 Fatty acid biosynthesis SBML MML
bav00062 Fatty acid elongation in mitochondria SBML MML
bav00071 Fatty acid metabolism SBML MML
bav00072 Synthesis and degradation of ketone bodies SBML MML
bav00100 (Undocumented) SBML MML
bav00120 (Undocumented) SBML MML
bav00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bav00150 Androgen and estrogen metabolism SBML MML
bav00220 (Undocumented) SBML MML
bav00230 Purine metabolism SBML MML
bav00240 Pyrimidine metabolism SBML MML
bav00251 (Undocumented) SBML MML
bav00252 (Undocumented) SBML MML
bav00260 Glycine, serine and threonine metabolism SBML MML
bav00271 (Undocumented) SBML MML
bav00272 (Undocumented) SBML MML
bav00280 Valine, leucine and isoleucine degradation SBML MML
bav00281 Geraniol degradation SBML MML
bav00290 Valine, leucine and isoleucine biosynthesis SBML MML
bav00300 Lysine biosynthesis SBML MML
bav00310 Lysine degradation SBML MML
bav00330 Arginine and proline metabolism SBML MML
bav00340 Histidine metabolism SBML MML
bav00350 Tyrosine metabolism SBML MML
bav00360 Phenylalanine metabolism SBML MML
bav00361 gamma-Hexachlorocyclohexane degradation SBML MML
bav00362 (Undocumented) SBML MML
bav00363 Bisphenol A degradation SBML MML
bav00364 Fluorobenzoate degradation SBML MML
bav00380 Tryptophan metabolism SBML MML
bav00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bav00401 Novobiocin biosynthesis SBML MML
bav00410 beta-Alanine metabolism SBML MML
bav00430 Taurine and hypotaurine metabolism SBML MML
bav00450 Selenoamino acid metabolism SBML MML
bav00460 (Undocumented) SBML MML
bav00471 D-Glutamine and D-glutamate metabolism SBML MML
bav00472 D-Arginine and D-ornithine metabolism SBML MML
bav00473 D-Alanine metabolism SBML MML
bav00480 Glutathione metabolism SBML MML
bav00500 Starch and sucrose metabolism SBML MML
bav00520 Amino sugar and nucleotide sugar metabolism SBML MML
bav00521 Streptomycin biosynthesis SBML MML
bav00523 Polyketide sugar unit biosynthesis SBML MML
bav00530 (Undocumented) SBML MML
bav00540 Lipopolysaccharide biosynthesis SBML MML
bav00550 Peptidoglycan biosynthesis SBML MML
bav00561 Glycerolipid metabolism SBML MML
bav00562 Inositol phosphate metabolism SBML MML
bav00564 Glycerophospholipid metabolism SBML MML
bav00565 Ether lipid metabolism SBML MML
bav00590 Arachidonic acid metabolism SBML MML
bav00592 alpha-Linolenic acid metabolism SBML MML
bav00620 Pyruvate metabolism SBML MML
bav00621 (Undocumented) SBML MML
bav00622 Toluene and xylene degradation SBML MML
bav00623 2,4-Dichlorobenzoate degradation SBML MML
bav00624 1- and 2-Methylnaphthalene degradation SBML MML
bav00626 Naphthalene and anthracene degradation SBML MML
bav00627 1,4-Dichlorobenzene degradation SBML MML
bav00628 Fluorene degradation SBML MML
bav00629 Carbazole degradation SBML MML
bav00630 Glyoxylate and dicarboxylate metabolism SBML MML
bav00632 (Undocumented) SBML MML
bav00640 Propanoate metabolism SBML MML
bav00641 3-Chloroacrylic acid degradation SBML MML
bav00642 Ethylbenzene degradation SBML MML
bav00643 Styrene degradation SBML MML
bav00650 Butanoate metabolism SBML MML
bav00660 C5-Branched dibasic acid metabolism SBML MML
bav00670 One carbon pool by folate SBML MML
bav00680 Methane metabolism SBML MML
bav00710 (Undocumented) SBML MML
bav00720 (Undocumented) SBML MML
bav00730 Thiamine metabolism SBML MML
bav00740 Riboflavin metabolism SBML MML
bav00750 Vitamin B6 metabolism SBML MML
bav00760 Nicotinate and nicotinamide metabolism SBML MML
bav00770 Pantothenate and CoA biosynthesis SBML MML
bav00780 Biotin metabolism SBML MML
bav00790 Folate biosynthesis SBML MML
bav00860 Porphyrin and chlorophyll metabolism SBML MML
bav00900 Terpenoid backbone biosynthesis SBML MML
bav00903 (Undocumented) SBML MML
bav00910 Nitrogen metabolism SBML MML
bav00920 Sulfur metabolism SBML MML
bav00930 Caprolactam degradation SBML MML
bav00940 (Undocumented) SBML MML
bav00950 (Undocumented) SBML MML
bav00960 (Undocumented) SBML MML
bav00970 Aminoacyl-tRNA biosynthesis SBML MML
bav00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
bav00982 (Undocumented) SBML MML
bav00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.