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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism bat: Bacillus anthracis Sterne

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
bat00010 Glycolysis / Gluconeogenesis SBML MML
bat00020 Citrate cycle (TCA cycle) SBML MML
bat00030 Pentose phosphate pathway SBML MML
bat00031 (Undocumented) SBML MML
bat00040 Pentose and glucuronate interconversions SBML MML
bat00051 Fructose and mannose metabolism SBML MML
bat00052 Galactose metabolism SBML MML
bat00053 Ascorbate and aldarate metabolism SBML MML
bat00061 Fatty acid biosynthesis SBML MML
bat00062 Fatty acid elongation in mitochondria SBML MML
bat00071 Fatty acid metabolism SBML MML
bat00072 Synthesis and degradation of ketone bodies SBML MML
bat00100 (Undocumented) SBML MML
bat00120 (Undocumented) SBML MML
bat00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
bat00150 Androgen and estrogen metabolism SBML MML
bat00220 (Undocumented) SBML MML
bat00230 Purine metabolism SBML MML
bat00240 Pyrimidine metabolism SBML MML
bat00251 (Undocumented) SBML MML
bat00252 (Undocumented) SBML MML
bat00260 Glycine, serine and threonine metabolism SBML MML
bat00271 (Undocumented) SBML MML
bat00272 (Undocumented) SBML MML
bat00280 Valine, leucine and isoleucine degradation SBML MML
bat00281 Geraniol degradation SBML MML
bat00290 Valine, leucine and isoleucine biosynthesis SBML MML
bat00300 Lysine biosynthesis SBML MML
bat00310 Lysine degradation SBML MML
bat00311 Penicillin and cephalosporin biosynthesis SBML MML
bat00330 Arginine and proline metabolism SBML MML
bat00340 Histidine metabolism SBML MML
bat00350 Tyrosine metabolism SBML MML
bat00360 Phenylalanine metabolism SBML MML
bat00361 gamma-Hexachlorocyclohexane degradation SBML MML
bat00362 (Undocumented) SBML MML
bat00363 Bisphenol A degradation SBML MML
bat00380 Tryptophan metabolism SBML MML
bat00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
bat00401 Novobiocin biosynthesis SBML MML
bat00410 beta-Alanine metabolism SBML MML
bat00430 Taurine and hypotaurine metabolism SBML MML
bat00440 Phosphonate and phosphinate metabolism SBML MML
bat00450 Selenoamino acid metabolism SBML MML
bat00460 (Undocumented) SBML MML
bat00471 D-Glutamine and D-glutamate metabolism SBML MML
bat00472 D-Arginine and D-ornithine metabolism SBML MML
bat00473 D-Alanine metabolism SBML MML
bat00480 Glutathione metabolism SBML MML
bat00500 Starch and sucrose metabolism SBML MML
bat00510 (Undocumented) SBML MML
bat00520 Amino sugar and nucleotide sugar metabolism SBML MML
bat00521 Streptomycin biosynthesis SBML MML
bat00523 Polyketide sugar unit biosynthesis SBML MML
bat00530 (Undocumented) SBML MML
bat00550 Peptidoglycan biosynthesis SBML MML
bat00561 Glycerolipid metabolism SBML MML
bat00562 Inositol phosphate metabolism SBML MML
bat00564 Glycerophospholipid metabolism SBML MML
bat00565 Ether lipid metabolism SBML MML
bat00590 Arachidonic acid metabolism SBML MML
bat00592 alpha-Linolenic acid metabolism SBML MML
bat00620 Pyruvate metabolism SBML MML
bat00622 Toluene and xylene degradation SBML MML
bat00624 1- and 2-Methylnaphthalene degradation SBML MML
bat00626 Naphthalene and anthracene degradation SBML MML
bat00627 1,4-Dichlorobenzene degradation SBML MML
bat00630 Glyoxylate and dicarboxylate metabolism SBML MML
bat00631 1,2-Dichloroethane degradation SBML MML
bat00632 (Undocumented) SBML MML
bat00640 Propanoate metabolism SBML MML
bat00641 3-Chloroacrylic acid degradation SBML MML
bat00642 Ethylbenzene degradation SBML MML
bat00643 Styrene degradation SBML MML
bat00650 Butanoate metabolism SBML MML
bat00660 C5-Branched dibasic acid metabolism SBML MML
bat00670 One carbon pool by folate SBML MML
bat00680 Methane metabolism SBML MML
bat00710 (Undocumented) SBML MML
bat00720 (Undocumented) SBML MML
bat00730 Thiamine metabolism SBML MML
bat00740 Riboflavin metabolism SBML MML
bat00750 Vitamin B6 metabolism SBML MML
bat00760 Nicotinate and nicotinamide metabolism SBML MML
bat00770 Pantothenate and CoA biosynthesis SBML MML
bat00780 Biotin metabolism SBML MML
bat00785 Lipoic acid metabolism SBML MML
bat00790 Folate biosynthesis SBML MML
bat00860 Porphyrin and chlorophyll metabolism SBML MML
bat00900 Terpenoid backbone biosynthesis SBML MML
bat00903 (Undocumented) SBML MML
bat00910 Nitrogen metabolism SBML MML
bat00920 Sulfur metabolism SBML MML
bat00930 Caprolactam degradation SBML MML
bat00960 (Undocumented) SBML MML
bat00970 Aminoacyl-tRNA biosynthesis SBML MML
bat00982 (Undocumented) SBML MML
bat00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.