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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism baf: Borrelia afzelii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
baf00010 Glycolysis / Gluconeogenesis SBML MML
baf00030 Pentose phosphate pathway SBML MML
baf00051 Fructose and mannose metabolism SBML MML
baf00052 Galactose metabolism SBML MML
baf00071 Fatty acid metabolism SBML MML
baf00072 Synthesis and degradation of ketone bodies SBML MML
baf00100 (Undocumented) SBML MML
baf00220 (Undocumented) SBML MML
baf00230 Purine metabolism SBML MML
baf00240 Pyrimidine metabolism SBML MML
baf00251 (Undocumented) SBML MML
baf00252 (Undocumented) SBML MML
baf00260 Glycine, serine and threonine metabolism SBML MML
baf00271 (Undocumented) SBML MML
baf00272 (Undocumented) SBML MML
baf00280 Valine, leucine and isoleucine degradation SBML MML
baf00290 Valine, leucine and isoleucine biosynthesis SBML MML
baf00300 Lysine biosynthesis SBML MML
baf00330 Arginine and proline metabolism SBML MML
baf00340 Histidine metabolism SBML MML
baf00380 Tryptophan metabolism SBML MML
baf00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
baf00430 Taurine and hypotaurine metabolism SBML MML
baf00450 Selenoamino acid metabolism SBML MML
baf00471 D-Glutamine and D-glutamate metabolism SBML MML
baf00473 D-Alanine metabolism SBML MML
baf00500 Starch and sucrose metabolism SBML MML
baf00530 (Undocumented) SBML MML
baf00550 Peptidoglycan biosynthesis SBML MML
baf00561 Glycerolipid metabolism SBML MML
baf00564 Glycerophospholipid metabolism SBML MML
baf00620 Pyruvate metabolism SBML MML
baf00630 Glyoxylate and dicarboxylate metabolism SBML MML
baf00632 (Undocumented) SBML MML
baf00640 Propanoate metabolism SBML MML
baf00650 Butanoate metabolism SBML MML
baf00670 One carbon pool by folate SBML MML
baf00710 (Undocumented) SBML MML
baf00730 Thiamine metabolism SBML MML
baf00750 Vitamin B6 metabolism SBML MML
baf00760 Nicotinate and nicotinamide metabolism SBML MML
baf00770 Pantothenate and CoA biosynthesis SBML MML
baf00900 Terpenoid backbone biosynthesis SBML MML
baf00970 Aminoacyl-tRNA biosynthesis SBML MML
baf00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.