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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism baa: Bacillus anthracis A2012

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
baa00010 Glycolysis / Gluconeogenesis SBML MML
baa00020 Citrate cycle (TCA cycle) SBML MML
baa00030 Pentose phosphate pathway SBML MML
baa00031 (Undocumented) SBML MML
baa00040 Pentose and glucuronate interconversions SBML MML
baa00051 Fructose and mannose metabolism SBML MML
baa00052 Galactose metabolism SBML MML
baa00053 Ascorbate and aldarate metabolism SBML MML
baa00061 Fatty acid biosynthesis SBML MML
baa00062 Fatty acid elongation in mitochondria SBML MML
baa00071 Fatty acid metabolism SBML MML
baa00072 Synthesis and degradation of ketone bodies SBML MML
baa00100 (Undocumented) SBML MML
baa00120 (Undocumented) SBML MML
baa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
baa00150 Androgen and estrogen metabolism SBML MML
baa00220 (Undocumented) SBML MML
baa00230 Purine metabolism SBML MML
baa00240 Pyrimidine metabolism SBML MML
baa00251 (Undocumented) SBML MML
baa00252 (Undocumented) SBML MML
baa00260 Glycine, serine and threonine metabolism SBML MML
baa00271 (Undocumented) SBML MML
baa00272 (Undocumented) SBML MML
baa00280 Valine, leucine and isoleucine degradation SBML MML
baa00281 Geraniol degradation SBML MML
baa00290 Valine, leucine and isoleucine biosynthesis SBML MML
baa00300 Lysine biosynthesis SBML MML
baa00310 Lysine degradation SBML MML
baa00311 Penicillin and cephalosporin biosynthesis SBML MML
baa00330 Arginine and proline metabolism SBML MML
baa00340 Histidine metabolism SBML MML
baa00350 Tyrosine metabolism SBML MML
baa00360 Phenylalanine metabolism SBML MML
baa00361 gamma-Hexachlorocyclohexane degradation SBML MML
baa00362 (Undocumented) SBML MML
baa00363 Bisphenol A degradation SBML MML
baa00380 Tryptophan metabolism SBML MML
baa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
baa00401 Novobiocin biosynthesis SBML MML
baa00410 beta-Alanine metabolism SBML MML
baa00430 Taurine and hypotaurine metabolism SBML MML
baa00440 Phosphonate and phosphinate metabolism SBML MML
baa00450 Selenoamino acid metabolism SBML MML
baa00460 (Undocumented) SBML MML
baa00471 D-Glutamine and D-glutamate metabolism SBML MML
baa00472 D-Arginine and D-ornithine metabolism SBML MML
baa00473 D-Alanine metabolism SBML MML
baa00480 Glutathione metabolism SBML MML
baa00500 Starch and sucrose metabolism SBML MML
baa00510 (Undocumented) SBML MML
baa00520 Amino sugar and nucleotide sugar metabolism SBML MML
baa00521 Streptomycin biosynthesis SBML MML
baa00523 Polyketide sugar unit biosynthesis SBML MML
baa00530 (Undocumented) SBML MML
baa00550 Peptidoglycan biosynthesis SBML MML
baa00561 Glycerolipid metabolism SBML MML
baa00562 Inositol phosphate metabolism SBML MML
baa00564 Glycerophospholipid metabolism SBML MML
baa00565 Ether lipid metabolism SBML MML
baa00590 Arachidonic acid metabolism SBML MML
baa00592 alpha-Linolenic acid metabolism SBML MML
baa00620 Pyruvate metabolism SBML MML
baa00622 Toluene and xylene degradation SBML MML
baa00624 1- and 2-Methylnaphthalene degradation SBML MML
baa00626 Naphthalene and anthracene degradation SBML MML
baa00627 1,4-Dichlorobenzene degradation SBML MML
baa00630 Glyoxylate and dicarboxylate metabolism SBML MML
baa00631 1,2-Dichloroethane degradation SBML MML
baa00632 (Undocumented) SBML MML
baa00640 Propanoate metabolism SBML MML
baa00641 3-Chloroacrylic acid degradation SBML MML
baa00642 Ethylbenzene degradation SBML MML
baa00643 Styrene degradation SBML MML
baa00650 Butanoate metabolism SBML MML
baa00660 C5-Branched dibasic acid metabolism SBML MML
baa00670 One carbon pool by folate SBML MML
baa00680 Methane metabolism SBML MML
baa00710 (Undocumented) SBML MML
baa00720 (Undocumented) SBML MML
baa00730 Thiamine metabolism SBML MML
baa00740 Riboflavin metabolism SBML MML
baa00750 Vitamin B6 metabolism SBML MML
baa00760 Nicotinate and nicotinamide metabolism SBML MML
baa00770 Pantothenate and CoA biosynthesis SBML MML
baa00780 Biotin metabolism SBML MML
baa00785 Lipoic acid metabolism SBML MML
baa00790 Folate biosynthesis SBML MML
baa00860 Porphyrin and chlorophyll metabolism SBML MML
baa00900 Terpenoid backbone biosynthesis SBML MML
baa00903 (Undocumented) SBML MML
baa00910 Nitrogen metabolism SBML MML
baa00920 Sulfur metabolism SBML MML
baa00930 Caprolactam degradation SBML MML
baa00960 (Undocumented) SBML MML
baa00970 Aminoacyl-tRNA biosynthesis SBML MML
baa00982 (Undocumented) SBML MML
baa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.