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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism azo: Azoarcus sp. BH72

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
azo00010 Glycolysis / Gluconeogenesis SBML MML
azo00020 Citrate cycle (TCA cycle) SBML MML
azo00030 Pentose phosphate pathway SBML MML
azo00040 Pentose and glucuronate interconversions SBML MML
azo00051 Fructose and mannose metabolism SBML MML
azo00052 Galactose metabolism SBML MML
azo00053 Ascorbate and aldarate metabolism SBML MML
azo00061 Fatty acid biosynthesis SBML MML
azo00062 Fatty acid elongation in mitochondria SBML MML
azo00071 Fatty acid metabolism SBML MML
azo00072 Synthesis and degradation of ketone bodies SBML MML
azo00100 (Undocumented) SBML MML
azo00120 (Undocumented) SBML MML
azo00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
azo00150 Androgen and estrogen metabolism SBML MML
azo00220 (Undocumented) SBML MML
azo00230 Purine metabolism SBML MML
azo00240 Pyrimidine metabolism SBML MML
azo00251 (Undocumented) SBML MML
azo00252 (Undocumented) SBML MML
azo00260 Glycine, serine and threonine metabolism SBML MML
azo00271 (Undocumented) SBML MML
azo00272 (Undocumented) SBML MML
azo00280 Valine, leucine and isoleucine degradation SBML MML
azo00281 Geraniol degradation SBML MML
azo00290 Valine, leucine and isoleucine biosynthesis SBML MML
azo00300 Lysine biosynthesis SBML MML
azo00310 Lysine degradation SBML MML
azo00311 Penicillin and cephalosporin biosynthesis SBML MML
azo00330 Arginine and proline metabolism SBML MML
azo00340 Histidine metabolism SBML MML
azo00350 Tyrosine metabolism SBML MML
azo00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
azo00360 Phenylalanine metabolism SBML MML
azo00361 gamma-Hexachlorocyclohexane degradation SBML MML
azo00362 (Undocumented) SBML MML
azo00363 Bisphenol A degradation SBML MML
azo00364 Fluorobenzoate degradation SBML MML
azo00380 Tryptophan metabolism SBML MML
azo00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
azo00401 Novobiocin biosynthesis SBML MML
azo00410 beta-Alanine metabolism SBML MML
azo00430 Taurine and hypotaurine metabolism SBML MML
azo00440 Phosphonate and phosphinate metabolism SBML MML
azo00450 Selenoamino acid metabolism SBML MML
azo00460 (Undocumented) SBML MML
azo00471 D-Glutamine and D-glutamate metabolism SBML MML
azo00472 D-Arginine and D-ornithine metabolism SBML MML
azo00473 D-Alanine metabolism SBML MML
azo00480 Glutathione metabolism SBML MML
azo00500 Starch and sucrose metabolism SBML MML
azo00510 (Undocumented) SBML MML
azo00520 Amino sugar and nucleotide sugar metabolism SBML MML
azo00521 Streptomycin biosynthesis SBML MML
azo00523 Polyketide sugar unit biosynthesis SBML MML
azo00530 (Undocumented) SBML MML
azo00540 Lipopolysaccharide biosynthesis SBML MML
azo00550 Peptidoglycan biosynthesis SBML MML
azo00561 Glycerolipid metabolism SBML MML
azo00562 Inositol phosphate metabolism SBML MML
azo00564 Glycerophospholipid metabolism SBML MML
azo00590 Arachidonic acid metabolism SBML MML
azo00592 alpha-Linolenic acid metabolism SBML MML
azo00620 Pyruvate metabolism SBML MML
azo00621 (Undocumented) SBML MML
azo00622 Toluene and xylene degradation SBML MML
azo00623 2,4-Dichlorobenzoate degradation SBML MML
azo00624 1- and 2-Methylnaphthalene degradation SBML MML
azo00625 (Undocumented) SBML MML
azo00626 Naphthalene and anthracene degradation SBML MML
azo00627 1,4-Dichlorobenzene degradation SBML MML
azo00628 Fluorene degradation SBML MML
azo00629 Carbazole degradation SBML MML
azo00630 Glyoxylate and dicarboxylate metabolism SBML MML
azo00631 1,2-Dichloroethane degradation SBML MML
azo00632 (Undocumented) SBML MML
azo00633 Trinitrotoluene degradation SBML MML
azo00640 Propanoate metabolism SBML MML
azo00641 3-Chloroacrylic acid degradation SBML MML
azo00642 Ethylbenzene degradation SBML MML
azo00643 Styrene degradation SBML MML
azo00650 Butanoate metabolism SBML MML
azo00660 C5-Branched dibasic acid metabolism SBML MML
azo00670 One carbon pool by folate SBML MML
azo00680 Methane metabolism SBML MML
azo00710 (Undocumented) SBML MML
azo00720 (Undocumented) SBML MML
azo00730 Thiamine metabolism SBML MML
azo00740 Riboflavin metabolism SBML MML
azo00750 Vitamin B6 metabolism SBML MML
azo00760 Nicotinate and nicotinamide metabolism SBML MML
azo00770 Pantothenate and CoA biosynthesis SBML MML
azo00780 Biotin metabolism SBML MML
azo00785 Lipoic acid metabolism SBML MML
azo00790 Folate biosynthesis SBML MML
azo00791 Atrazine degradation SBML MML
azo00860 Porphyrin and chlorophyll metabolism SBML MML
azo00900 Terpenoid backbone biosynthesis SBML MML
azo00903 (Undocumented) SBML MML
azo00910 Nitrogen metabolism SBML MML
azo00920 Sulfur metabolism SBML MML
azo00930 Caprolactam degradation SBML MML
azo00940 (Undocumented) SBML MML
azo00950 (Undocumented) SBML MML
azo00960 (Undocumented) SBML MML
azo00970 Aminoacyl-tRNA biosynthesis SBML MML
azo00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
azo00982 (Undocumented) SBML MML
azo00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.