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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism azc: Azorhizobium caulinodans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
azc00010 Glycolysis / Gluconeogenesis SBML MML
azc00020 Citrate cycle (TCA cycle) SBML MML
azc00030 Pentose phosphate pathway SBML MML
azc00031 (Undocumented) SBML MML
azc00040 Pentose and glucuronate interconversions SBML MML
azc00051 Fructose and mannose metabolism SBML MML
azc00052 Galactose metabolism SBML MML
azc00053 Ascorbate and aldarate metabolism SBML MML
azc00061 Fatty acid biosynthesis SBML MML
azc00062 Fatty acid elongation in mitochondria SBML MML
azc00071 Fatty acid metabolism SBML MML
azc00072 Synthesis and degradation of ketone bodies SBML MML
azc00100 (Undocumented) SBML MML
azc00120 (Undocumented) SBML MML
azc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
azc00150 Androgen and estrogen metabolism SBML MML
azc00220 (Undocumented) SBML MML
azc00230 Purine metabolism SBML MML
azc00240 Pyrimidine metabolism SBML MML
azc00251 (Undocumented) SBML MML
azc00252 (Undocumented) SBML MML
azc00260 Glycine, serine and threonine metabolism SBML MML
azc00271 (Undocumented) SBML MML
azc00272 (Undocumented) SBML MML
azc00280 Valine, leucine and isoleucine degradation SBML MML
azc00281 Geraniol degradation SBML MML
azc00290 Valine, leucine and isoleucine biosynthesis SBML MML
azc00300 Lysine biosynthesis SBML MML
azc00310 Lysine degradation SBML MML
azc00311 Penicillin and cephalosporin biosynthesis SBML MML
azc00330 Arginine and proline metabolism SBML MML
azc00340 Histidine metabolism SBML MML
azc00350 Tyrosine metabolism SBML MML
azc00360 Phenylalanine metabolism SBML MML
azc00361 gamma-Hexachlorocyclohexane degradation SBML MML
azc00362 (Undocumented) SBML MML
azc00363 Bisphenol A degradation SBML MML
azc00364 Fluorobenzoate degradation SBML MML
azc00380 Tryptophan metabolism SBML MML
azc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
azc00401 Novobiocin biosynthesis SBML MML
azc00410 beta-Alanine metabolism SBML MML
azc00430 Taurine and hypotaurine metabolism SBML MML
azc00440 Phosphonate and phosphinate metabolism SBML MML
azc00450 Selenoamino acid metabolism SBML MML
azc00460 (Undocumented) SBML MML
azc00471 D-Glutamine and D-glutamate metabolism SBML MML
azc00472 D-Arginine and D-ornithine metabolism SBML MML
azc00473 D-Alanine metabolism SBML MML
azc00480 Glutathione metabolism SBML MML
azc00500 Starch and sucrose metabolism SBML MML
azc00520 Amino sugar and nucleotide sugar metabolism SBML MML
azc00521 Streptomycin biosynthesis SBML MML
azc00523 Polyketide sugar unit biosynthesis SBML MML
azc00530 (Undocumented) SBML MML
azc00540 Lipopolysaccharide biosynthesis SBML MML
azc00550 Peptidoglycan biosynthesis SBML MML
azc00561 Glycerolipid metabolism SBML MML
azc00562 Inositol phosphate metabolism SBML MML
azc00564 Glycerophospholipid metabolism SBML MML
azc00592 alpha-Linolenic acid metabolism SBML MML
azc00620 Pyruvate metabolism SBML MML
azc00622 Toluene and xylene degradation SBML MML
azc00623 2,4-Dichlorobenzoate degradation SBML MML
azc00624 1- and 2-Methylnaphthalene degradation SBML MML
azc00625 (Undocumented) SBML MML
azc00626 Naphthalene and anthracene degradation SBML MML
azc00627 1,4-Dichlorobenzene degradation SBML MML
azc00628 Fluorene degradation SBML MML
azc00630 Glyoxylate and dicarboxylate metabolism SBML MML
azc00631 1,2-Dichloroethane degradation SBML MML
azc00632 (Undocumented) SBML MML
azc00633 Trinitrotoluene degradation SBML MML
azc00640 Propanoate metabolism SBML MML
azc00641 3-Chloroacrylic acid degradation SBML MML
azc00642 Ethylbenzene degradation SBML MML
azc00643 Styrene degradation SBML MML
azc00650 Butanoate metabolism SBML MML
azc00660 C5-Branched dibasic acid metabolism SBML MML
azc00670 One carbon pool by folate SBML MML
azc00680 Methane metabolism SBML MML
azc00710 (Undocumented) SBML MML
azc00720 (Undocumented) SBML MML
azc00730 Thiamine metabolism SBML MML
azc00740 Riboflavin metabolism SBML MML
azc00750 Vitamin B6 metabolism SBML MML
azc00760 Nicotinate and nicotinamide metabolism SBML MML
azc00770 Pantothenate and CoA biosynthesis SBML MML
azc00780 Biotin metabolism SBML MML
azc00785 Lipoic acid metabolism SBML MML
azc00790 Folate biosynthesis SBML MML
azc00791 Atrazine degradation SBML MML
azc00860 Porphyrin and chlorophyll metabolism SBML MML
azc00900 Terpenoid backbone biosynthesis SBML MML
azc00903 (Undocumented) SBML MML
azc00910 Nitrogen metabolism SBML MML
azc00920 Sulfur metabolism SBML MML
azc00930 Caprolactam degradation SBML MML
azc00940 (Undocumented) SBML MML
azc00941 (Undocumented) SBML MML
azc00950 (Undocumented) SBML MML
azc00960 (Undocumented) SBML MML
azc00970 Aminoacyl-tRNA biosynthesis SBML MML
azc00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
azc00982 (Undocumented) SBML MML
azc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.