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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ava: Anabaena variabilis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ava00010 Glycolysis / Gluconeogenesis SBML MML
ava00020 Citrate cycle (TCA cycle) SBML MML
ava00030 Pentose phosphate pathway SBML MML
ava00031 (Undocumented) SBML MML
ava00040 Pentose and glucuronate interconversions SBML MML
ava00051 Fructose and mannose metabolism SBML MML
ava00052 Galactose metabolism SBML MML
ava00053 Ascorbate and aldarate metabolism SBML MML
ava00061 Fatty acid biosynthesis SBML MML
ava00071 Fatty acid metabolism SBML MML
ava00100 (Undocumented) SBML MML
ava00120 (Undocumented) SBML MML
ava00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ava00140 (Undocumented) SBML MML
ava00150 Androgen and estrogen metabolism SBML MML
ava00220 (Undocumented) SBML MML
ava00230 Purine metabolism SBML MML
ava00240 Pyrimidine metabolism SBML MML
ava00251 (Undocumented) SBML MML
ava00252 (Undocumented) SBML MML
ava00260 Glycine, serine and threonine metabolism SBML MML
ava00271 (Undocumented) SBML MML
ava00272 (Undocumented) SBML MML
ava00280 Valine, leucine and isoleucine degradation SBML MML
ava00290 Valine, leucine and isoleucine biosynthesis SBML MML
ava00300 Lysine biosynthesis SBML MML
ava00310 Lysine degradation SBML MML
ava00311 Penicillin and cephalosporin biosynthesis SBML MML
ava00330 Arginine and proline metabolism SBML MML
ava00340 Histidine metabolism SBML MML
ava00350 Tyrosine metabolism SBML MML
ava00360 Phenylalanine metabolism SBML MML
ava00361 gamma-Hexachlorocyclohexane degradation SBML MML
ava00362 (Undocumented) SBML MML
ava00364 Fluorobenzoate degradation SBML MML
ava00380 Tryptophan metabolism SBML MML
ava00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ava00401 Novobiocin biosynthesis SBML MML
ava00410 beta-Alanine metabolism SBML MML
ava00430 Taurine and hypotaurine metabolism SBML MML
ava00450 Selenoamino acid metabolism SBML MML
ava00460 (Undocumented) SBML MML
ava00471 D-Glutamine and D-glutamate metabolism SBML MML
ava00473 D-Alanine metabolism SBML MML
ava00480 Glutathione metabolism SBML MML
ava00500 Starch and sucrose metabolism SBML MML
ava00510 (Undocumented) SBML MML
ava00520 Amino sugar and nucleotide sugar metabolism SBML MML
ava00521 Streptomycin biosynthesis SBML MML
ava00523 Polyketide sugar unit biosynthesis SBML MML
ava00530 (Undocumented) SBML MML
ava00540 Lipopolysaccharide biosynthesis SBML MML
ava00550 Peptidoglycan biosynthesis SBML MML
ava00561 Glycerolipid metabolism SBML MML
ava00562 Inositol phosphate metabolism SBML MML
ava00564 Glycerophospholipid metabolism SBML MML
ava00590 Arachidonic acid metabolism SBML MML
ava00620 Pyruvate metabolism SBML MML
ava00623 2,4-Dichlorobenzoate degradation SBML MML
ava00624 1- and 2-Methylnaphthalene degradation SBML MML
ava00626 Naphthalene and anthracene degradation SBML MML
ava00627 1,4-Dichlorobenzene degradation SBML MML
ava00630 Glyoxylate and dicarboxylate metabolism SBML MML
ava00631 1,2-Dichloroethane degradation SBML MML
ava00632 (Undocumented) SBML MML
ava00633 Trinitrotoluene degradation SBML MML
ava00640 Propanoate metabolism SBML MML
ava00641 3-Chloroacrylic acid degradation SBML MML
ava00643 Styrene degradation SBML MML
ava00650 Butanoate metabolism SBML MML
ava00660 C5-Branched dibasic acid metabolism SBML MML
ava00670 One carbon pool by folate SBML MML
ava00680 Methane metabolism SBML MML
ava00710 (Undocumented) SBML MML
ava00720 (Undocumented) SBML MML
ava00730 Thiamine metabolism SBML MML
ava00740 Riboflavin metabolism SBML MML
ava00750 Vitamin B6 metabolism SBML MML
ava00760 Nicotinate and nicotinamide metabolism SBML MML
ava00770 Pantothenate and CoA biosynthesis SBML MML
ava00780 Biotin metabolism SBML MML
ava00785 Lipoic acid metabolism SBML MML
ava00790 Folate biosynthesis SBML MML
ava00791 Atrazine degradation SBML MML
ava00860 Porphyrin and chlorophyll metabolism SBML MML
ava00900 Terpenoid backbone biosynthesis SBML MML
ava00903 (Undocumented) SBML MML
ava00904 (Undocumented) SBML MML
ava00906 Carotenoid biosynthesis SBML MML
ava00908 (Undocumented) SBML MML
ava00910 Nitrogen metabolism SBML MML
ava00920 Sulfur metabolism SBML MML
ava00930 Caprolactam degradation SBML MML
ava00940 (Undocumented) SBML MML
ava00941 (Undocumented) SBML MML
ava00960 (Undocumented) SBML MML
ava00970 Aminoacyl-tRNA biosynthesis SBML MML
ava00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ava00982 (Undocumented) SBML MML
ava00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.