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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism asa: Aeromonas salmonicida

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
asa00010 Glycolysis / Gluconeogenesis SBML MML
asa00020 Citrate cycle (TCA cycle) SBML MML
asa00030 Pentose phosphate pathway SBML MML
asa00031 (Undocumented) SBML MML
asa00040 Pentose and glucuronate interconversions SBML MML
asa00051 Fructose and mannose metabolism SBML MML
asa00052 Galactose metabolism SBML MML
asa00053 Ascorbate and aldarate metabolism SBML MML
asa00061 Fatty acid biosynthesis SBML MML
asa00062 Fatty acid elongation in mitochondria SBML MML
asa00071 Fatty acid metabolism SBML MML
asa00072 Synthesis and degradation of ketone bodies SBML MML
asa00100 (Undocumented) SBML MML
asa00120 (Undocumented) SBML MML
asa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
asa00220 (Undocumented) SBML MML
asa00230 Purine metabolism SBML MML
asa00240 Pyrimidine metabolism SBML MML
asa00251 (Undocumented) SBML MML
asa00252 (Undocumented) SBML MML
asa00260 Glycine, serine and threonine metabolism SBML MML
asa00271 (Undocumented) SBML MML
asa00272 (Undocumented) SBML MML
asa00280 Valine, leucine and isoleucine degradation SBML MML
asa00281 Geraniol degradation SBML MML
asa00290 Valine, leucine and isoleucine biosynthesis SBML MML
asa00300 Lysine biosynthesis SBML MML
asa00310 Lysine degradation SBML MML
asa00330 Arginine and proline metabolism SBML MML
asa00340 Histidine metabolism SBML MML
asa00350 Tyrosine metabolism SBML MML
asa00360 Phenylalanine metabolism SBML MML
asa00361 gamma-Hexachlorocyclohexane degradation SBML MML
asa00362 (Undocumented) SBML MML
asa00363 Bisphenol A degradation SBML MML
asa00364 Fluorobenzoate degradation SBML MML
asa00380 Tryptophan metabolism SBML MML
asa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
asa00401 Novobiocin biosynthesis SBML MML
asa00410 beta-Alanine metabolism SBML MML
asa00430 Taurine and hypotaurine metabolism SBML MML
asa00440 Phosphonate and phosphinate metabolism SBML MML
asa00450 Selenoamino acid metabolism SBML MML
asa00460 (Undocumented) SBML MML
asa00471 D-Glutamine and D-glutamate metabolism SBML MML
asa00473 D-Alanine metabolism SBML MML
asa00480 Glutathione metabolism SBML MML
asa00500 Starch and sucrose metabolism SBML MML
asa00520 Amino sugar and nucleotide sugar metabolism SBML MML
asa00521 Streptomycin biosynthesis SBML MML
asa00523 Polyketide sugar unit biosynthesis SBML MML
asa00530 (Undocumented) SBML MML
asa00540 Lipopolysaccharide biosynthesis SBML MML
asa00550 Peptidoglycan biosynthesis SBML MML
asa00561 Glycerolipid metabolism SBML MML
asa00562 Inositol phosphate metabolism SBML MML
asa00564 Glycerophospholipid metabolism SBML MML
asa00590 Arachidonic acid metabolism SBML MML
asa00592 alpha-Linolenic acid metabolism SBML MML
asa00620 Pyruvate metabolism SBML MML
asa00623 2,4-Dichlorobenzoate degradation SBML MML
asa00624 1- and 2-Methylnaphthalene degradation SBML MML
asa00626 Naphthalene and anthracene degradation SBML MML
asa00628 Fluorene degradation SBML MML
asa00630 Glyoxylate and dicarboxylate metabolism SBML MML
asa00632 (Undocumented) SBML MML
asa00633 Trinitrotoluene degradation SBML MML
asa00640 Propanoate metabolism SBML MML
asa00641 3-Chloroacrylic acid degradation SBML MML
asa00642 Ethylbenzene degradation SBML MML
asa00643 Styrene degradation SBML MML
asa00650 Butanoate metabolism SBML MML
asa00660 C5-Branched dibasic acid metabolism SBML MML
asa00670 One carbon pool by folate SBML MML
asa00680 Methane metabolism SBML MML
asa00710 (Undocumented) SBML MML
asa00720 (Undocumented) SBML MML
asa00730 Thiamine metabolism SBML MML
asa00740 Riboflavin metabolism SBML MML
asa00750 Vitamin B6 metabolism SBML MML
asa00760 Nicotinate and nicotinamide metabolism SBML MML
asa00770 Pantothenate and CoA biosynthesis SBML MML
asa00780 Biotin metabolism SBML MML
asa00785 Lipoic acid metabolism SBML MML
asa00790 Folate biosynthesis SBML MML
asa00791 Atrazine degradation SBML MML
asa00860 Porphyrin and chlorophyll metabolism SBML MML
asa00900 Terpenoid backbone biosynthesis SBML MML
asa00903 (Undocumented) SBML MML
asa00910 Nitrogen metabolism SBML MML
asa00920 Sulfur metabolism SBML MML
asa00930 Caprolactam degradation SBML MML
asa00940 (Undocumented) SBML MML
asa00950 (Undocumented) SBML MML
asa00960 (Undocumented) SBML MML
asa00970 Aminoacyl-tRNA biosynthesis SBML MML
asa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
asa00982 (Undocumented) SBML MML
asa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.