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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism art: Arthrobacter sp. FB24

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
art00010 Glycolysis / Gluconeogenesis SBML MML
art00020 Citrate cycle (TCA cycle) SBML MML
art00030 Pentose phosphate pathway SBML MML
art00031 (Undocumented) SBML MML
art00040 Pentose and glucuronate interconversions SBML MML
art00051 Fructose and mannose metabolism SBML MML
art00052 Galactose metabolism SBML MML
art00053 Ascorbate and aldarate metabolism SBML MML
art00061 Fatty acid biosynthesis SBML MML
art00062 Fatty acid elongation in mitochondria SBML MML
art00071 Fatty acid metabolism SBML MML
art00072 Synthesis and degradation of ketone bodies SBML MML
art00100 (Undocumented) SBML MML
art00120 (Undocumented) SBML MML
art00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
art00220 (Undocumented) SBML MML
art00230 Purine metabolism SBML MML
art00240 Pyrimidine metabolism SBML MML
art00251 (Undocumented) SBML MML
art00252 (Undocumented) SBML MML
art00260 Glycine, serine and threonine metabolism SBML MML
art00271 (Undocumented) SBML MML
art00272 (Undocumented) SBML MML
art00280 Valine, leucine and isoleucine degradation SBML MML
art00281 Geraniol degradation SBML MML
art00290 Valine, leucine and isoleucine biosynthesis SBML MML
art00300 Lysine biosynthesis SBML MML
art00310 Lysine degradation SBML MML
art00330 Arginine and proline metabolism SBML MML
art00340 Histidine metabolism SBML MML
art00350 Tyrosine metabolism SBML MML
art00360 Phenylalanine metabolism SBML MML
art00361 gamma-Hexachlorocyclohexane degradation SBML MML
art00362 (Undocumented) SBML MML
art00364 Fluorobenzoate degradation SBML MML
art00380 Tryptophan metabolism SBML MML
art00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
art00410 beta-Alanine metabolism SBML MML
art00430 Taurine and hypotaurine metabolism SBML MML
art00450 Selenoamino acid metabolism SBML MML
art00460 (Undocumented) SBML MML
art00471 D-Glutamine and D-glutamate metabolism SBML MML
art00473 D-Alanine metabolism SBML MML
art00480 Glutathione metabolism SBML MML
art00500 Starch and sucrose metabolism SBML MML
art00520 Amino sugar and nucleotide sugar metabolism SBML MML
art00521 Streptomycin biosynthesis SBML MML
art00530 (Undocumented) SBML MML
art00540 Lipopolysaccharide biosynthesis SBML MML
art00550 Peptidoglycan biosynthesis SBML MML
art00561 Glycerolipid metabolism SBML MML
art00562 Inositol phosphate metabolism SBML MML
art00564 Glycerophospholipid metabolism SBML MML
art00590 Arachidonic acid metabolism SBML MML
art00592 alpha-Linolenic acid metabolism SBML MML
art00600 Sphingolipid metabolism SBML MML
art00620 Pyruvate metabolism SBML MML
art00622 Toluene and xylene degradation SBML MML
art00623 2,4-Dichlorobenzoate degradation SBML MML
art00627 1,4-Dichlorobenzene degradation SBML MML
art00630 Glyoxylate and dicarboxylate metabolism SBML MML
art00632 (Undocumented) SBML MML
art00640 Propanoate metabolism SBML MML
art00641 3-Chloroacrylic acid degradation SBML MML
art00643 Styrene degradation SBML MML
art00650 Butanoate metabolism SBML MML
art00660 C5-Branched dibasic acid metabolism SBML MML
art00670 One carbon pool by folate SBML MML
art00680 Methane metabolism SBML MML
art00710 (Undocumented) SBML MML
art00720 (Undocumented) SBML MML
art00730 Thiamine metabolism SBML MML
art00740 Riboflavin metabolism SBML MML
art00750 Vitamin B6 metabolism SBML MML
art00760 Nicotinate and nicotinamide metabolism SBML MML
art00770 Pantothenate and CoA biosynthesis SBML MML
art00785 Lipoic acid metabolism SBML MML
art00790 Folate biosynthesis SBML MML
art00791 Atrazine degradation SBML MML
art00860 Porphyrin and chlorophyll metabolism SBML MML
art00900 Terpenoid backbone biosynthesis SBML MML
art00910 Nitrogen metabolism SBML MML
art00920 Sulfur metabolism SBML MML
art00941 (Undocumented) SBML MML
art00960 (Undocumented) SBML MML
art00970 Aminoacyl-tRNA biosynthesis SBML MML
art00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.