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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism aph: Anaplasma phagocytophilum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
aph00010 Glycolysis / Gluconeogenesis SBML MML
aph00020 Citrate cycle (TCA cycle) SBML MML
aph00030 Pentose phosphate pathway SBML MML
aph00051 Fructose and mannose metabolism SBML MML
aph00061 Fatty acid biosynthesis SBML MML
aph00100 (Undocumented) SBML MML
aph00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
aph00220 (Undocumented) SBML MML
aph00230 Purine metabolism SBML MML
aph00240 Pyrimidine metabolism SBML MML
aph00251 (Undocumented) SBML MML
aph00252 (Undocumented) SBML MML
aph00260 Glycine, serine and threonine metabolism SBML MML
aph00271 (Undocumented) SBML MML
aph00272 (Undocumented) SBML MML
aph00280 Valine, leucine and isoleucine degradation SBML MML
aph00281 Geraniol degradation SBML MML
aph00290 Valine, leucine and isoleucine biosynthesis SBML MML
aph00300 Lysine biosynthesis SBML MML
aph00310 Lysine degradation SBML MML
aph00330 Arginine and proline metabolism SBML MML
aph00340 Histidine metabolism SBML MML
aph00350 Tyrosine metabolism SBML MML
aph00360 Phenylalanine metabolism SBML MML
aph00380 Tryptophan metabolism SBML MML
aph00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
aph00450 Selenoamino acid metabolism SBML MML
aph00480 Glutathione metabolism SBML MML
aph00550 Peptidoglycan biosynthesis SBML MML
aph00562 Inositol phosphate metabolism SBML MML
aph00564 Glycerophospholipid metabolism SBML MML
aph00620 Pyruvate metabolism SBML MML
aph00624 1- and 2-Methylnaphthalene degradation SBML MML
aph00626 Naphthalene and anthracene degradation SBML MML
aph00630 Glyoxylate and dicarboxylate metabolism SBML MML
aph00632 (Undocumented) SBML MML
aph00640 Propanoate metabolism SBML MML
aph00650 Butanoate metabolism SBML MML
aph00670 One carbon pool by folate SBML MML
aph00710 (Undocumented) SBML MML
aph00720 (Undocumented) SBML MML
aph00730 Thiamine metabolism SBML MML
aph00740 Riboflavin metabolism SBML MML
aph00750 Vitamin B6 metabolism SBML MML
aph00760 Nicotinate and nicotinamide metabolism SBML MML
aph00770 Pantothenate and CoA biosynthesis SBML MML
aph00780 Biotin metabolism SBML MML
aph00785 Lipoic acid metabolism SBML MML
aph00790 Folate biosynthesis SBML MML
aph00860 Porphyrin and chlorophyll metabolism SBML MML
aph00900 Terpenoid backbone biosynthesis SBML MML
aph00903 (Undocumented) SBML MML
aph00910 Nitrogen metabolism SBML MML
aph00960 (Undocumented) SBML MML
aph00970 Aminoacyl-tRNA biosynthesis SBML MML
aph00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.