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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ama: Anaplasma marginale St. Maries

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ama00010 Glycolysis / Gluconeogenesis SBML MML
ama00020 Citrate cycle (TCA cycle) SBML MML
ama00030 Pentose phosphate pathway SBML MML
ama00051 Fructose and mannose metabolism SBML MML
ama00061 Fatty acid biosynthesis SBML MML
ama00062 Fatty acid elongation in mitochondria SBML MML
ama00071 Fatty acid metabolism SBML MML
ama00100 (Undocumented) SBML MML
ama00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ama00220 (Undocumented) SBML MML
ama00230 Purine metabolism SBML MML
ama00240 Pyrimidine metabolism SBML MML
ama00251 (Undocumented) SBML MML
ama00252 (Undocumented) SBML MML
ama00260 Glycine, serine and threonine metabolism SBML MML
ama00271 (Undocumented) SBML MML
ama00272 (Undocumented) SBML MML
ama00280 Valine, leucine and isoleucine degradation SBML MML
ama00290 Valine, leucine and isoleucine biosynthesis SBML MML
ama00300 Lysine biosynthesis SBML MML
ama00310 Lysine degradation SBML MML
ama00330 Arginine and proline metabolism SBML MML
ama00340 Histidine metabolism SBML MML
ama00350 Tyrosine metabolism SBML MML
ama00380 Tryptophan metabolism SBML MML
ama00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ama00450 Selenoamino acid metabolism SBML MML
ama00471 D-Glutamine and D-glutamate metabolism SBML MML
ama00480 Glutathione metabolism SBML MML
ama00530 (Undocumented) SBML MML
ama00550 Peptidoglycan biosynthesis SBML MML
ama00562 Inositol phosphate metabolism SBML MML
ama00564 Glycerophospholipid metabolism SBML MML
ama00620 Pyruvate metabolism SBML MML
ama00630 Glyoxylate and dicarboxylate metabolism SBML MML
ama00640 Propanoate metabolism SBML MML
ama00650 Butanoate metabolism SBML MML
ama00670 One carbon pool by folate SBML MML
ama00710 (Undocumented) SBML MML
ama00720 (Undocumented) SBML MML
ama00730 Thiamine metabolism SBML MML
ama00740 Riboflavin metabolism SBML MML
ama00750 Vitamin B6 metabolism SBML MML
ama00760 Nicotinate and nicotinamide metabolism SBML MML
ama00770 Pantothenate and CoA biosynthesis SBML MML
ama00780 Biotin metabolism SBML MML
ama00785 Lipoic acid metabolism SBML MML
ama00790 Folate biosynthesis SBML MML
ama00860 Porphyrin and chlorophyll metabolism SBML MML
ama00900 Terpenoid backbone biosynthesis SBML MML
ama00910 Nitrogen metabolism SBML MML
ama00970 Aminoacyl-tRNA biosynthesis SBML MML
ama00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ama00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.