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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism aha: Aeromonas hydrophila

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
aha00010 Glycolysis / Gluconeogenesis SBML MML
aha00020 Citrate cycle (TCA cycle) SBML MML
aha00030 Pentose phosphate pathway SBML MML
aha00031 (Undocumented) SBML MML
aha00040 Pentose and glucuronate interconversions SBML MML
aha00051 Fructose and mannose metabolism SBML MML
aha00052 Galactose metabolism SBML MML
aha00053 Ascorbate and aldarate metabolism SBML MML
aha00061 Fatty acid biosynthesis SBML MML
aha00062 Fatty acid elongation in mitochondria SBML MML
aha00071 Fatty acid metabolism SBML MML
aha00072 Synthesis and degradation of ketone bodies SBML MML
aha00100 (Undocumented) SBML MML
aha00120 (Undocumented) SBML MML
aha00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
aha00150 Androgen and estrogen metabolism SBML MML
aha00220 (Undocumented) SBML MML
aha00230 Purine metabolism SBML MML
aha00240 Pyrimidine metabolism SBML MML
aha00251 (Undocumented) SBML MML
aha00252 (Undocumented) SBML MML
aha00260 Glycine, serine and threonine metabolism SBML MML
aha00271 (Undocumented) SBML MML
aha00272 (Undocumented) SBML MML
aha00280 Valine, leucine and isoleucine degradation SBML MML
aha00281 Geraniol degradation SBML MML
aha00290 Valine, leucine and isoleucine biosynthesis SBML MML
aha00300 Lysine biosynthesis SBML MML
aha00310 Lysine degradation SBML MML
aha00311 Penicillin and cephalosporin biosynthesis SBML MML
aha00330 Arginine and proline metabolism SBML MML
aha00340 Histidine metabolism SBML MML
aha00350 Tyrosine metabolism SBML MML
aha00360 Phenylalanine metabolism SBML MML
aha00361 gamma-Hexachlorocyclohexane degradation SBML MML
aha00362 (Undocumented) SBML MML
aha00380 Tryptophan metabolism SBML MML
aha00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
aha00401 Novobiocin biosynthesis SBML MML
aha00410 beta-Alanine metabolism SBML MML
aha00430 Taurine and hypotaurine metabolism SBML MML
aha00440 Phosphonate and phosphinate metabolism SBML MML
aha00450 Selenoamino acid metabolism SBML MML
aha00460 (Undocumented) SBML MML
aha00471 D-Glutamine and D-glutamate metabolism SBML MML
aha00473 D-Alanine metabolism SBML MML
aha00480 Glutathione metabolism SBML MML
aha00500 Starch and sucrose metabolism SBML MML
aha00510 (Undocumented) SBML MML
aha00520 Amino sugar and nucleotide sugar metabolism SBML MML
aha00521 Streptomycin biosynthesis SBML MML
aha00523 Polyketide sugar unit biosynthesis SBML MML
aha00530 (Undocumented) SBML MML
aha00540 Lipopolysaccharide biosynthesis SBML MML
aha00550 Peptidoglycan biosynthesis SBML MML
aha00561 Glycerolipid metabolism SBML MML
aha00562 Inositol phosphate metabolism SBML MML
aha00564 Glycerophospholipid metabolism SBML MML
aha00590 Arachidonic acid metabolism SBML MML
aha00592 alpha-Linolenic acid metabolism SBML MML
aha00600 Sphingolipid metabolism SBML MML
aha00620 Pyruvate metabolism SBML MML
aha00624 1- and 2-Methylnaphthalene degradation SBML MML
aha00630 Glyoxylate and dicarboxylate metabolism SBML MML
aha00632 (Undocumented) SBML MML
aha00633 Trinitrotoluene degradation SBML MML
aha00640 Propanoate metabolism SBML MML
aha00641 3-Chloroacrylic acid degradation SBML MML
aha00642 Ethylbenzene degradation SBML MML
aha00643 Styrene degradation SBML MML
aha00650 Butanoate metabolism SBML MML
aha00660 C5-Branched dibasic acid metabolism SBML MML
aha00670 One carbon pool by folate SBML MML
aha00680 Methane metabolism SBML MML
aha00710 (Undocumented) SBML MML
aha00720 (Undocumented) SBML MML
aha00730 Thiamine metabolism SBML MML
aha00740 Riboflavin metabolism SBML MML
aha00750 Vitamin B6 metabolism SBML MML
aha00760 Nicotinate and nicotinamide metabolism SBML MML
aha00770 Pantothenate and CoA biosynthesis SBML MML
aha00780 Biotin metabolism SBML MML
aha00785 Lipoic acid metabolism SBML MML
aha00790 Folate biosynthesis SBML MML
aha00791 Atrazine degradation SBML MML
aha00860 Porphyrin and chlorophyll metabolism SBML MML
aha00900 Terpenoid backbone biosynthesis SBML MML
aha00903 (Undocumented) SBML MML
aha00910 Nitrogen metabolism SBML MML
aha00920 Sulfur metabolism SBML MML
aha00930 Caprolactam degradation SBML MML
aha00950 (Undocumented) SBML MML
aha00960 (Undocumented) SBML MML
aha00970 Aminoacyl-tRNA biosynthesis SBML MML
aha00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
aha00982 (Undocumented) SBML MML
aha00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.