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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism afu: Archaeoglobus fulgidus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
afu00010 Glycolysis / Gluconeogenesis SBML MML
afu00020 Citrate cycle (TCA cycle) SBML MML
afu00030 Pentose phosphate pathway SBML MML
afu00040 Pentose and glucuronate interconversions SBML MML
afu00051 Fructose and mannose metabolism SBML MML
afu00062 Fatty acid elongation in mitochondria SBML MML
afu00071 Fatty acid metabolism SBML MML
afu00100 (Undocumented) SBML MML
afu00120 (Undocumented) SBML MML
afu00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
afu00220 (Undocumented) SBML MML
afu00230 Purine metabolism SBML MML
afu00240 Pyrimidine metabolism SBML MML
afu00251 (Undocumented) SBML MML
afu00252 (Undocumented) SBML MML
afu00260 Glycine, serine and threonine metabolism SBML MML
afu00271 (Undocumented) SBML MML
afu00272 (Undocumented) SBML MML
afu00280 Valine, leucine and isoleucine degradation SBML MML
afu00281 Geraniol degradation SBML MML
afu00290 Valine, leucine and isoleucine biosynthesis SBML MML
afu00300 Lysine biosynthesis SBML MML
afu00310 Lysine degradation SBML MML
afu00330 Arginine and proline metabolism SBML MML
afu00340 Histidine metabolism SBML MML
afu00350 Tyrosine metabolism SBML MML
afu00360 Phenylalanine metabolism SBML MML
afu00362 (Undocumented) SBML MML
afu00380 Tryptophan metabolism SBML MML
afu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
afu00401 Novobiocin biosynthesis SBML MML
afu00410 beta-Alanine metabolism SBML MML
afu00430 Taurine and hypotaurine metabolism SBML MML
afu00450 Selenoamino acid metabolism SBML MML
afu00460 (Undocumented) SBML MML
afu00500 Starch and sucrose metabolism SBML MML
afu00510 (Undocumented) SBML MML
afu00520 Amino sugar and nucleotide sugar metabolism SBML MML
afu00521 Streptomycin biosynthesis SBML MML
afu00523 Polyketide sugar unit biosynthesis SBML MML
afu00550 Peptidoglycan biosynthesis SBML MML
afu00561 Glycerolipid metabolism SBML MML
afu00562 Inositol phosphate metabolism SBML MML
afu00564 Glycerophospholipid metabolism SBML MML
afu00620 Pyruvate metabolism SBML MML
afu00624 1- and 2-Methylnaphthalene degradation SBML MML
afu00630 Glyoxylate and dicarboxylate metabolism SBML MML
afu00632 (Undocumented) SBML MML
afu00633 Trinitrotoluene degradation SBML MML
afu00640 Propanoate metabolism SBML MML
afu00650 Butanoate metabolism SBML MML
afu00660 C5-Branched dibasic acid metabolism SBML MML
afu00670 One carbon pool by folate SBML MML
afu00680 Methane metabolism SBML MML
afu00710 (Undocumented) SBML MML
afu00720 (Undocumented) SBML MML
afu00730 Thiamine metabolism SBML MML
afu00740 Riboflavin metabolism SBML MML
afu00750 Vitamin B6 metabolism SBML MML
afu00760 Nicotinate and nicotinamide metabolism SBML MML
afu00770 Pantothenate and CoA biosynthesis SBML MML
afu00780 Biotin metabolism SBML MML
afu00790 Folate biosynthesis SBML MML
afu00860 Porphyrin and chlorophyll metabolism SBML MML
afu00900 Terpenoid backbone biosynthesis SBML MML
afu00903 (Undocumented) SBML MML
afu00910 Nitrogen metabolism SBML MML
afu00920 Sulfur metabolism SBML MML
afu00930 Caprolactam degradation SBML MML
afu00950 (Undocumented) SBML MML
afu00970 Aminoacyl-tRNA biosynthesis SBML MML
afu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.