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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism aci: Acinetobacter sp. ADP1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
aci00010 Glycolysis / Gluconeogenesis SBML MML
aci00020 Citrate cycle (TCA cycle) SBML MML
aci00030 Pentose phosphate pathway SBML MML
aci00031 (Undocumented) SBML MML
aci00040 Pentose and glucuronate interconversions SBML MML
aci00051 Fructose and mannose metabolism SBML MML
aci00052 Galactose metabolism SBML MML
aci00053 Ascorbate and aldarate metabolism SBML MML
aci00061 Fatty acid biosynthesis SBML MML
aci00062 Fatty acid elongation in mitochondria SBML MML
aci00071 Fatty acid metabolism SBML MML
aci00072 Synthesis and degradation of ketone bodies SBML MML
aci00100 (Undocumented) SBML MML
aci00120 (Undocumented) SBML MML
aci00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
aci00150 Androgen and estrogen metabolism SBML MML
aci00220 (Undocumented) SBML MML
aci00230 Purine metabolism SBML MML
aci00240 Pyrimidine metabolism SBML MML
aci00251 (Undocumented) SBML MML
aci00252 (Undocumented) SBML MML
aci00260 Glycine, serine and threonine metabolism SBML MML
aci00271 (Undocumented) SBML MML
aci00272 (Undocumented) SBML MML
aci00280 Valine, leucine and isoleucine degradation SBML MML
aci00281 Geraniol degradation SBML MML
aci00290 Valine, leucine and isoleucine biosynthesis SBML MML
aci00300 Lysine biosynthesis SBML MML
aci00310 Lysine degradation SBML MML
aci00311 Penicillin and cephalosporin biosynthesis SBML MML
aci00330 Arginine and proline metabolism SBML MML
aci00340 Histidine metabolism SBML MML
aci00350 Tyrosine metabolism SBML MML
aci00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
aci00360 Phenylalanine metabolism SBML MML
aci00361 gamma-Hexachlorocyclohexane degradation SBML MML
aci00362 (Undocumented) SBML MML
aci00363 Bisphenol A degradation SBML MML
aci00364 Fluorobenzoate degradation SBML MML
aci00380 Tryptophan metabolism SBML MML
aci00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
aci00401 Novobiocin biosynthesis SBML MML
aci00410 beta-Alanine metabolism SBML MML
aci00430 Taurine and hypotaurine metabolism SBML MML
aci00440 Phosphonate and phosphinate metabolism SBML MML
aci00450 Selenoamino acid metabolism SBML MML
aci00460 (Undocumented) SBML MML
aci00471 D-Glutamine and D-glutamate metabolism SBML MML
aci00473 D-Alanine metabolism SBML MML
aci00480 Glutathione metabolism SBML MML
aci00500 Starch and sucrose metabolism SBML MML
aci00520 Amino sugar and nucleotide sugar metabolism SBML MML
aci00521 Streptomycin biosynthesis SBML MML
aci00523 Polyketide sugar unit biosynthesis SBML MML
aci00530 (Undocumented) SBML MML
aci00540 Lipopolysaccharide biosynthesis SBML MML
aci00550 Peptidoglycan biosynthesis SBML MML
aci00561 Glycerolipid metabolism SBML MML
aci00562 Inositol phosphate metabolism SBML MML
aci00564 Glycerophospholipid metabolism SBML MML
aci00590 Arachidonic acid metabolism SBML MML
aci00592 alpha-Linolenic acid metabolism SBML MML
aci00620 Pyruvate metabolism SBML MML
aci00622 Toluene and xylene degradation SBML MML
aci00623 2,4-Dichlorobenzoate degradation SBML MML
aci00624 1- and 2-Methylnaphthalene degradation SBML MML
aci00626 Naphthalene and anthracene degradation SBML MML
aci00627 1,4-Dichlorobenzene degradation SBML MML
aci00628 Fluorene degradation SBML MML
aci00629 Carbazole degradation SBML MML
aci00630 Glyoxylate and dicarboxylate metabolism SBML MML
aci00632 (Undocumented) SBML MML
aci00633 Trinitrotoluene degradation SBML MML
aci00640 Propanoate metabolism SBML MML
aci00641 3-Chloroacrylic acid degradation SBML MML
aci00642 Ethylbenzene degradation SBML MML
aci00643 Styrene degradation SBML MML
aci00650 Butanoate metabolism SBML MML
aci00660 C5-Branched dibasic acid metabolism SBML MML
aci00670 One carbon pool by folate SBML MML
aci00680 Methane metabolism SBML MML
aci00710 (Undocumented) SBML MML
aci00720 (Undocumented) SBML MML
aci00730 Thiamine metabolism SBML MML
aci00740 Riboflavin metabolism SBML MML
aci00750 Vitamin B6 metabolism SBML MML
aci00760 Nicotinate and nicotinamide metabolism SBML MML
aci00770 Pantothenate and CoA biosynthesis SBML MML
aci00780 Biotin metabolism SBML MML
aci00785 Lipoic acid metabolism SBML MML
aci00790 Folate biosynthesis SBML MML
aci00791 Atrazine degradation SBML MML
aci00860 Porphyrin and chlorophyll metabolism SBML MML
aci00900 Terpenoid backbone biosynthesis SBML MML
aci00903 (Undocumented) SBML MML
aci00910 Nitrogen metabolism SBML MML
aci00920 Sulfur metabolism SBML MML
aci00930 Caprolactam degradation SBML MML
aci00940 (Undocumented) SBML MML
aci00950 (Undocumented) SBML MML
aci00960 (Undocumented) SBML MML
aci00970 Aminoacyl-tRNA biosynthesis SBML MML
aci00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
aci00982 (Undocumented) SBML MML
aci00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.