This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism abm: Acinetobacter baumannii SDF

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
abm00010 Glycolysis / Gluconeogenesis SBML MML
abm00020 Citrate cycle (TCA cycle) SBML MML
abm00030 Pentose phosphate pathway SBML MML
abm00031 (Undocumented) SBML MML
abm00040 Pentose and glucuronate interconversions SBML MML
abm00051 Fructose and mannose metabolism SBML MML
abm00052 Galactose metabolism SBML MML
abm00053 Ascorbate and aldarate metabolism SBML MML
abm00061 Fatty acid biosynthesis SBML MML
abm00062 Fatty acid elongation in mitochondria SBML MML
abm00071 Fatty acid metabolism SBML MML
abm00100 (Undocumented) SBML MML
abm00120 (Undocumented) SBML MML
abm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
abm00150 Androgen and estrogen metabolism SBML MML
abm00220 (Undocumented) SBML MML
abm00230 Purine metabolism SBML MML
abm00240 Pyrimidine metabolism SBML MML
abm00251 (Undocumented) SBML MML
abm00252 (Undocumented) SBML MML
abm00260 Glycine, serine and threonine metabolism SBML MML
abm00271 (Undocumented) SBML MML
abm00272 (Undocumented) SBML MML
abm00280 Valine, leucine and isoleucine degradation SBML MML
abm00281 Geraniol degradation SBML MML
abm00290 Valine, leucine and isoleucine biosynthesis SBML MML
abm00300 Lysine biosynthesis SBML MML
abm00310 Lysine degradation SBML MML
abm00330 Arginine and proline metabolism SBML MML
abm00340 Histidine metabolism SBML MML
abm00350 Tyrosine metabolism SBML MML
abm00360 Phenylalanine metabolism SBML MML
abm00361 gamma-Hexachlorocyclohexane degradation SBML MML
abm00362 (Undocumented) SBML MML
abm00363 Bisphenol A degradation SBML MML
abm00364 Fluorobenzoate degradation SBML MML
abm00380 Tryptophan metabolism SBML MML
abm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
abm00401 Novobiocin biosynthesis SBML MML
abm00410 beta-Alanine metabolism SBML MML
abm00430 Taurine and hypotaurine metabolism SBML MML
abm00440 Phosphonate and phosphinate metabolism SBML MML
abm00450 Selenoamino acid metabolism SBML MML
abm00460 (Undocumented) SBML MML
abm00471 D-Glutamine and D-glutamate metabolism SBML MML
abm00473 D-Alanine metabolism SBML MML
abm00480 Glutathione metabolism SBML MML
abm00500 Starch and sucrose metabolism SBML MML
abm00510 (Undocumented) SBML MML
abm00520 Amino sugar and nucleotide sugar metabolism SBML MML
abm00521 Streptomycin biosynthesis SBML MML
abm00530 (Undocumented) SBML MML
abm00540 Lipopolysaccharide biosynthesis SBML MML
abm00550 Peptidoglycan biosynthesis SBML MML
abm00561 Glycerolipid metabolism SBML MML
abm00562 Inositol phosphate metabolism SBML MML
abm00564 Glycerophospholipid metabolism SBML MML
abm00590 Arachidonic acid metabolism SBML MML
abm00592 alpha-Linolenic acid metabolism SBML MML
abm00620 Pyruvate metabolism SBML MML
abm00622 Toluene and xylene degradation SBML MML
abm00623 2,4-Dichlorobenzoate degradation SBML MML
abm00624 1- and 2-Methylnaphthalene degradation SBML MML
abm00626 Naphthalene and anthracene degradation SBML MML
abm00627 1,4-Dichlorobenzene degradation SBML MML
abm00629 Carbazole degradation SBML MML
abm00630 Glyoxylate and dicarboxylate metabolism SBML MML
abm00632 (Undocumented) SBML MML
abm00640 Propanoate metabolism SBML MML
abm00641 3-Chloroacrylic acid degradation SBML MML
abm00642 Ethylbenzene degradation SBML MML
abm00643 Styrene degradation SBML MML
abm00650 Butanoate metabolism SBML MML
abm00660 C5-Branched dibasic acid metabolism SBML MML
abm00670 One carbon pool by folate SBML MML
abm00680 Methane metabolism SBML MML
abm00710 (Undocumented) SBML MML
abm00720 (Undocumented) SBML MML
abm00730 Thiamine metabolism SBML MML
abm00740 Riboflavin metabolism SBML MML
abm00750 Vitamin B6 metabolism SBML MML
abm00760 Nicotinate and nicotinamide metabolism SBML MML
abm00770 Pantothenate and CoA biosynthesis SBML MML
abm00780 Biotin metabolism SBML MML
abm00785 Lipoic acid metabolism SBML MML
abm00790 Folate biosynthesis SBML MML
abm00791 Atrazine degradation SBML MML
abm00860 Porphyrin and chlorophyll metabolism SBML MML
abm00900 Terpenoid backbone biosynthesis SBML MML
abm00903 (Undocumented) SBML MML
abm00910 Nitrogen metabolism SBML MML
abm00920 Sulfur metabolism SBML MML
abm00930 Caprolactam degradation SBML MML
abm00940 (Undocumented) SBML MML
abm00950 (Undocumented) SBML MML
abm00960 (Undocumented) SBML MML
abm00970 Aminoacyl-tRNA biosynthesis SBML MML
abm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
abm00982 (Undocumented) SBML MML
abm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.