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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism aae: Aquifex aeolicus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
aae00010 Glycolysis / Gluconeogenesis SBML MML
aae00020 Citrate cycle (TCA cycle) SBML MML
aae00030 Pentose phosphate pathway SBML MML
aae00040 Pentose and glucuronate interconversions SBML MML
aae00051 Fructose and mannose metabolism SBML MML
aae00052 Galactose metabolism SBML MML
aae00053 Ascorbate and aldarate metabolism SBML MML
aae00061 Fatty acid biosynthesis SBML MML
aae00071 Fatty acid metabolism SBML MML
aae00100 (Undocumented) SBML MML
aae00120 (Undocumented) SBML MML
aae00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
aae00220 (Undocumented) SBML MML
aae00230 Purine metabolism SBML MML
aae00240 Pyrimidine metabolism SBML MML
aae00251 (Undocumented) SBML MML
aae00252 (Undocumented) SBML MML
aae00260 Glycine, serine and threonine metabolism SBML MML
aae00271 (Undocumented) SBML MML
aae00272 (Undocumented) SBML MML
aae00280 Valine, leucine and isoleucine degradation SBML MML
aae00290 Valine, leucine and isoleucine biosynthesis SBML MML
aae00300 Lysine biosynthesis SBML MML
aae00310 Lysine degradation SBML MML
aae00330 Arginine and proline metabolism SBML MML
aae00340 Histidine metabolism SBML MML
aae00350 Tyrosine metabolism SBML MML
aae00360 Phenylalanine metabolism SBML MML
aae00361 gamma-Hexachlorocyclohexane degradation SBML MML
aae00362 (Undocumented) SBML MML
aae00364 Fluorobenzoate degradation SBML MML
aae00380 Tryptophan metabolism SBML MML
aae00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
aae00401 Novobiocin biosynthesis SBML MML
aae00410 beta-Alanine metabolism SBML MML
aae00450 Selenoamino acid metabolism SBML MML
aae00460 (Undocumented) SBML MML
aae00471 D-Glutamine and D-glutamate metabolism SBML MML
aae00473 D-Alanine metabolism SBML MML
aae00480 Glutathione metabolism SBML MML
aae00500 Starch and sucrose metabolism SBML MML
aae00520 Amino sugar and nucleotide sugar metabolism SBML MML
aae00521 Streptomycin biosynthesis SBML MML
aae00530 (Undocumented) SBML MML
aae00540 Lipopolysaccharide biosynthesis SBML MML
aae00550 Peptidoglycan biosynthesis SBML MML
aae00561 Glycerolipid metabolism SBML MML
aae00562 Inositol phosphate metabolism SBML MML
aae00564 Glycerophospholipid metabolism SBML MML
aae00620 Pyruvate metabolism SBML MML
aae00624 1- and 2-Methylnaphthalene degradation SBML MML
aae00627 1,4-Dichlorobenzene degradation SBML MML
aae00630 Glyoxylate and dicarboxylate metabolism SBML MML
aae00632 (Undocumented) SBML MML
aae00640 Propanoate metabolism SBML MML
aae00641 3-Chloroacrylic acid degradation SBML MML
aae00650 Butanoate metabolism SBML MML
aae00660 C5-Branched dibasic acid metabolism SBML MML
aae00670 One carbon pool by folate SBML MML
aae00680 Methane metabolism SBML MML
aae00710 (Undocumented) SBML MML
aae00720 (Undocumented) SBML MML
aae00730 Thiamine metabolism SBML MML
aae00740 Riboflavin metabolism SBML MML
aae00750 Vitamin B6 metabolism SBML MML
aae00760 Nicotinate and nicotinamide metabolism SBML MML
aae00770 Pantothenate and CoA biosynthesis SBML MML
aae00780 Biotin metabolism SBML MML
aae00785 Lipoic acid metabolism SBML MML
aae00790 Folate biosynthesis SBML MML
aae00860 Porphyrin and chlorophyll metabolism SBML MML
aae00900 Terpenoid backbone biosynthesis SBML MML
aae00903 (Undocumented) SBML MML
aae00910 Nitrogen metabolism SBML MML
aae00920 Sulfur metabolism SBML MML
aae00970 Aminoacyl-tRNA biosynthesis SBML MML
aae00982 (Undocumented) SBML MML
aae00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.