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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Reusing Model Numbers

Please follow the instructions below for reusing a model number of a retired model.

Overview:

  1. Put modelnumber.txt of retired model into directory containing new model.
  2. Add model number to project file and extract model info (extractModelInfo.pl).
  3. Run 'updateModel.pl' script.
  4. Remove old model directory.
  5. New model should now be in database and available on the web.

Detailed instructions:

  1. First add a new model like you normally do EXCEPT stop after you have extracted the model info from the project file (ie: extractModelInfo.pl projectname.proj)
  2. Next get an old number: Go to Model curation page
    • check the 'List retired models in database' button and then hit 'List Models'
    • Right down the first number in the list (that is the number you will use for the new model).

  3. Now create a file named modelnumber.txt and put just the 4 digit number in the file (ex: 0151 or 0021 , etc...). You can copy this file from the original, retired model, if available.
  4. At the top of the source page of the project file, add the number line:
    // MODEL NUMBER 0152
  5. Now use the update model procedure to update database (Model update info)
  6. Remove retired model directory and its contents ('rm -vr modeldirname').
  7. Next remove from cvs:
    • 'cvs remove -l modeldirname'
    • 'cvs commit modeldirname'

[This page was last modified 12Jan10, 3:55 pm.]

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.